Javier Quilez Oliete's repositories
jaquol.github.io
Build a Jekyll blog in minutes, without touching the command line.
2017-07-14_differential_expression_analysis_trapnell
Differential expression analysis using Kallisto and Sleuth
blog-like-old
A place to share how I solved questions that I could not quickly find in Google and/or took me some time to figure out.
tadbit
TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models
svtyper
Bayesian genotyper for structural variants
Scripts
Ptyhon and bash scripts
Minerva-Mount-Sinai
I started...
FASTQC
Bash scripts and Ipython notebook for running the FASTQC program over multiple samples and analyze its quality control reports