jaquejbrito

star-join-spark

Two efficient algorithms to process Star Joins using the Spark framework: Spark Bloom-Filtered Cascade Join (SBFCJ) and the Spark Broadcast Join (SBJ)

star-join-bitmap

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics.software.packaging.solutions

This is the GitHub repository for our recent study "Packaging and containerizing of bioinformatics software: advances, challenges, and opportunities" Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.

CMash

Fast and accurate set similarity estimation via containment min hash

COVID19byZip

data_reusability

reusability

enhancing_reproducibility

ENose-Decorr_Humdt_Temp

error.correction.benchmarking

new EC

fasta-to-fastq

Automatically exported from code.google.com/p/fasta-to-fastq

ggmModel

good.software

This is the GitHub repository for our recent study "A comprehensive analysis of the usability and archival stability of omics computational tools and resources." Please follow to the repository's wiki for more information and details on how this repository is connected to the paper.

hbase

Mirror of Apache HBase

imrep

ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.

jaquejbrito.github.io

My personal website

matplotlib

matplotlib: plotting with Python

meta-review

Manuscript describing open collaborative writing with Manubot

my_manuscript

pkg-manager-review

Manubot Repo for Package Manager Review Paper

presentations

repository for various presentations by members of Mangul lab at USC

RandomPy

Random python scripts that may serve as real life examples.

rootstock

Clone me to create your Manubot manuscript

sbt

SBT_publication

SBT_publication

sbt_tool

seeing.beyond.target.results

results for running SBT on TCGA and OP datasets

segmentacao

suffix_tree

This is a conversion for Python 3 of the python module suffix_tree v2.1, python bindings for a C implementation of Generalized Suffix Trees. http://www.daimi.au.dk/~mailund/suffix_tree.html

test_pr