japhir

ArchConfigs

configuration files for my Arch Linux machine

snvecR

Calculate Earth’s Obliquity and Precession in the Past

GeologicTimeScale

Read in the GTS as a csv, then use ggplot2 in R to make a timescale. Use patchwork to add it to your figures.

stdstats

Simulation and plotting code for "Optimizing the use of carbonate standards to minimize uncertainties in clumped isotope data"

colourlog

generate plots of colourlogs from core photographs

cp-2018-42

Scripts and data used in "The 405 kyr and 2.4 Myr eccentricity components in Cenozoic carbon isotope records"

rpackagesetup

Create a new R package from scratch using usethis

clumpedcalib

Calculate and Apply Clumped Isotope Calibrations Using Bootstrapping

stdsim

Simulating Clumped Isotope standard statistics

Aragonite_clumped

Repo containing all the R code to do the data processing and create figures as descibed in the accompanying paper on the clumped isotope composition of lab-grown aragonitic Arctica islandica shells

cmocean-1

Colormap setup for standardizing commonly-plotting oceanographic variables.

crafted-emacs

A sensible base Emacs configuration.

crafter-configs

A listing of configurations by System Crafters community members!

D47crunch

Python library for processing and standardizing carbonate clumped-isotope analyses, from low-level data out of a dual-inlet mass spectrometer to final, “absolute” Δ47 and Δ48 values with fully propagated analytical error estimates.

dataviz

A book covering the fundamentals of data visualization

DnD_mobs

Simulate many dice-rolls for D&D 5e mobs

geosurvey

analyze survey results

hledger

Robust, fast, intuitive plain text accounting tool with CLI, TUI and web interfaces.

isogeochem

The isogeochem R package aims to make working with stable oxygen, carbon, and clumped isotope data reproducible and straightforward.

japhir

Config files for my GitHub profile.

knitr_case_studies

Inference case studies in knitr

masspec-syncscript

mu

maildir indexer/searcher + emacs mail client + guile bindings

oceanexplorer

This package enables easy exploration of the NOAA WORLD OCEAN ATLAS

org-appear

Toggle visibility of hidden Org mode element parts upon entering and leaving an element

org-roam

Rudimentary Roam replica with Org-mode

r-pkgs

Building R packages

rethinking2

RGDGT

R code to evaluate isoprenoidal and branched Glycerol Dialkyl Glycerol Tetraethers for paleotemperature and paleoenvironmental reconstructions

visualise-orbitN

Visualise solar system simulation output from orbitN in Blender