Howard Hughes Medical Institute's repositories
workstation
Janelia Workstation
SongExplorer
deep learning for acoustic signals
pydantic-ome-ngff
Pydantic models for OME-NGFF
janelia-unity-toolkit
Packages for the Unity game engine, emphasizing animal studies in VR.
JaneliaDataStandards
A pilot experiment to dissminate information about Janelia's biomaging data formats.
PyWaveSurfer
PyWaveSurfer is a Python package for reading WaveSurfer data files in Python.
xarray-ome-ngff
Integration between xarray and the ome-ngff data model.
EM_recon_pipeline
Pipeline scripts and tools for reconstructing Electron Microscopy volumes.
G4_Display_Tools
Collection of tools for the G4 LED arena displays.
hortacloud-website
Documentation website for HortaCloud
colormipsearch
Distributed Color Depth MIP Search
gpt-semantic-search
Semantic search for Janelia resources using GPT models
neuronbridge-aligners
Containerized Brain/VNC aligners for NeuronBridge
neuronbridge-precompute
Utilities for indexing and transferring of NeuronBridge-related files
ossi-website
Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.
containers
Containers for workflow plugins
dis-utilities
Utilities for Data and Information Services
doi_common
Library of common DOI-related functions for Python
nextflow-modules
Nextflow modules for use with nf-core tooling
s3-proxy
Reverse Proxy for S3-like file systems
stitching-spark
Reconstruct big images from overlapping tiled images on a Spark cluster.
webstation-fetch
Wrapper around isomorphic-fetch to add custom headers to each request