janelia-flyem's repositories
neuroproof_examples
Example data and commands for exploring NeuroProof
ConnectomeHackathon2016
DVID Ecosystem, Big Data Infrastructure, and Deployment for EM Connectomics
ConnectomeHackathon2015
Information on the Janelia Connectome Workshop and Hackathon 2015
serviceproxy
Application that manages REST-based Services
dvid-tileviewer
Web viewer for DVID quadtrees.
cluster-calclabels
Framework for clustering label computation of an image dataset
sample-grayscale
Sample stack of 8-bit grayscale images.
synapse-geometry
A python library that supports synapse-level processing on neuroimaging data
DVIDScripts
Repository for useful scripts for interacting with DVID
analyze_segmentation
Web service to compare label volumes to ground truth data.
bodyviewer
Javascript client for body surface viewing
Clotho
Interactive exploration, visualization, and manipulation of graph data
dvid-import
Import label slabs into DVID
dvid-transfer
DVID-to-DVID data transfer via APIs
DVIDBench
Benchmarking tool for testing responsiveness and capacity of DVID servers
flyem-dockerfiles
Docker Files for Fly EM Software
flyem-ilastik
FlyEM-tuned collection of ilastik components
goji
Goji is a minimalistic web framework for Golang that's high in antioxidants
librarian
Coordinating server for assigning labels to different clients
notebookscripts
Ipython notebook files for FlyEM
openseadragon
An open-source, web-based multiscale tile viewer for 3d image volumes, implemented in pure JavaScript.
partition
Creates substack descriptions based on ROI spans in JSON format
raveler-exporter
Exports Raveler superpixel-based images + maps to a series of gzip compressed label slabs.
raveler-utils
Small utilities for creating bounds, tiles, etc.
S-Cpp
Various analyses of the cell type data and synapses from the Fly EM reconstructions
service-contracts
Janelia service interface specifications: JSON schemas and RAML.