James Butler's repositories
SlicerBrainVolumeRefinement
Extension for the Brain Volume Refinement methods (BVeR)
ExtensionsIndex
Slicer extensions index
IGSIO
A collection of tools and algorithms for image guided systems
ITK
Insight Toolkit (ITK) -- Official Repository
LesionSpotlightExtension
3D Slicer extension that provides T2-FLAIR MRI manipulation methods in order to increase contrast and segment hyperintense Multiple Sclerosis lesions
light-the-torch
Install PyTorch distributions with computation backend auto-detection
MONAILabel
MONAI Label is an intelligent open source image labeling and learning tool.
python-cmake-buildsystem
A cmake buildsystem for compiling Python
PythonQt
CMake-ified version of PythonQt
qt-easy-build
Scripts allowing to easily build Qt with OpenSSL support on Linux, MacOSX or Windows
ROBEXBrainExtraction
3D Slicer extension to offer a brain extraction algorithm for MRI structural images. This extension has the ROBEX brain extraction implementation.
SegmentationReview
Slicer3D extension for rating using Likert-type score Deep-learning generated segmentations, with segment editor funtionality. Created to speed up the validation process done by a clinician - the dataset loads in one batch with no need to load masks and volumes separately.
ShapeVariationAnalyzer
Shape modeling and classification, extract shape features
Slicer
Multi-platform, free open source software for visualization and image computing.
Slicer-LesionSimulatorExtension
3D Slicer extension that provides a toolkit for Multiple Sclerosis lesion simulation in multimodal MRI images, such as T1, T2, T2-FLAIR and DTI scalar maps.
Slicer-Liver
3D Slicer extension for liver analysis and therapy planning
Slicer-PET-MUST-segmenter
MUltiple SUV Thresholding (MUST)-segmenter is a semi-automated PET image segmentation tool that enables delineation of multiple lesions at once, and extracts the lesions' features.
slicer.org
slicer.org website landing page
SlicerCustomAppTemplate
Template to be used as a starting point for creating a custom 3D Slicer application
SlicerMarkupsToModel
3D Slicer extension to create tube or closed surface model from markup fiducials
SlicerSegmentEditorExtraEffects
Watershed segmentation effect for Segment Editor in 3D Slicer
SlicerTotalSegmentator
Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model
TotalSegmentator
Tool for robust segmentation of >100 important anatomical structures in CT images
vtkAddon
General-purpose features that may be integrated into VTK library in the future.