jag2231's repositories

synthdnm

This tool allows for training de novo classifiers via creating "synthetic de novos" from private, inherited variants.

pydnm

Python clone of ForestDNM

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tiff_parser

For parsing, maybe ouputting tiff parsers

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AnnotationDatabase

annotation database for human genetics, genomics and epigenomics

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bionim

A collection of useful algorithms and data structures for bioinformatics

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blog

Build a Jekyll blog in minutes, without touching the command line.

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delly_for_s3

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

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long_read_sv_pipeline

ONT and PacBio data

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moco

motion correction

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sv2_2

Support Vector Structural Variation Genotyper

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genSV

A tool for genotyping structural variations from third generation sequencing data (ONT/PacBio)

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HyTrack

Tracking neurons in hydra vulgaris

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long_read_svs

a description of the GoLong pipeline for SV calling from long-read sequencing data (ONT/PacBio)

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modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

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PyBPL

Bayesian Program Learning toolkit in Python

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quartz

🌱 host your own second brain and digital garden for free

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SceneParsing

Crude image segmentation model based on deep learning

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scripts

Various scripts

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sfari_nf_pipeline

Annotating SFARI VCFs, making PLINK genotype files

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SV2

Support Vector Structural Variation Genotyper

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