jamaliki

automl

Google Brain AutoML

cryodrgn

Neural networks for cryo-EM reconstruction

CryoREAD

CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

evals

Evals is a framework for evaluating OpenAI models and an open-source registry of benchmarks.

examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

flash-attention

Fast and memory-efficient exact attention

hh-suite

Remote protein homology detection suite.

jamaliki.github.io

mlflux

A fork of the MLFlow open source platform for the machine learning lifecycle. Meant to be simplified and (in places) improved.

optimizers

For optimization algorithm research and development.

planet-express

Super minimal trainer class for PyTorch. Designed for distributed data parallel and mixed-precision training.

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

qscore

Q-score in pure Python without requiring Chimera

rust-trie

Python Package With A Trie Implementation in Rust

GPU-Puzzles

Solve puzzles. Learn CUDA.

MolProbity

Protein and nucleic acid validation service

progres

Fast protein structure searching or your money back

progres-sinkhorn-metric

Using Progres embeddings to get the distance between two sets of proteins

RFdiffusion

Code for running RFdiffusion