jaleezyy

Jalees A. Nasir's repositories

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

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Related files pertaining to a SARS-CoV-2 bait capture platform.

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For a list of taxon IDs, VHost-Classifier will filter out the viruses and then sort these viruses into groups based on their host lineage.

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The BaitFisher-package is a software package for designing hybrid enrichment probes. For more information see:

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Software for hybridization capture bait design

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HyPhy: Hypothesis testing using Phylogenies

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HyPhy standalone analyses

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Small collection of tools for performing quality control on coronavirus sequencing data and genomes

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A collection of workflows for analyzing the SARS-CoV-2 genome.

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Standalone example output from the SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL).

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SL(1): Cure your bad habit of mistyping

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