jakevc

Jake VanCampen's repositories

karyopype

A chromosomal visualization package for python.

Language:PythonMIT10 2 2

bedCons

Calculate conservation statistics over regions in a BED file, from a phyloP or phastCons bigWig

Language:Go1 20

golang-eb

Deploy sample golang webapp to single instance elastic beanstalk with TLS.

Language:Go1 20

nxgn-tools

Tools written for working with next-generation sequencing data

Language:Python1 30

snakemake_inputfuncs

Example Snakemake workflow describing the use of input functions.

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awsEbTest

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azure-storage-azcopy

The new Azure Storage data transfer utility - AzCopy v10

MIT000

bioconda-recipes

Conda recipes for the bioconda channel.

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bmatrix

Matrix implementation in rust with BTC

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conda-package-publish-action

Github Action to deploy conda package to Anaconda repository

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course-v3

The 3rd edition of course.fast.ai

Language:Jupyter NotebookApache-2.0010

cutAnd_seacr

Input: fastq or bams; Output: bedgraphs, seacr peaks, counts table

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easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

Language:PythonGPL-2.0020

Genie

Validation and processing of GENIE files

MIT000

Genomic-ULMFiT

ULMFiT for Genomic Sequence Data

Language:Jupyter Notebook010

gophercises

Go problems from https://gophercises.com/

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higlass-manage

A utility script to manage local docker instances of HiGlass

Language:PythonMIT010

hugo-theme-hello-friend-ng

Pretty basic theme for Hugo that covers all of the essentials. All you have to do is start typing!

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jakevc

website

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MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

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MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

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nf-genie

Nextflow workflow for main GENIE processing

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nlpsandbox-client

Python client to interact with the NLP Sandbox

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one-click-hugo-cms

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qdrant-helm

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rawpy

📷 RAW image processing for Python, a wrapper for libraw

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snakemake

This is the development home of the workflow management system Snakemake. For general information, see

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snakemake-azbatch-example

Example workflow for snakemake azure batch example workflow

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snakemake_multiqc

An example use of multiQC within snakemake

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terraec2-

Terraform EC2 example

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