jakebiesinger

HTS-waterworks

A Ruffus pipeline for Analysis of High-Throughput Sequencing data

AREM

AREM -- Aligning Reads by Expectation-Maximization

bedtools

A powerful toolset for genome arithmetic.

git-cola

git-cola: The highly caffeinated git GUI

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pymc

Bayesian inference in Python

StarCluster

StarCluster is a utility for creating and managing computing clusters hosted on Amazon's Elastic Compute Cloud (EC2).

biopython

Official git repository for Biopython (converted from CVS)

ipython

Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.

ruffus

Ruffus is a lightweight python module for running computational pipelines.

charityada.org

cloud-builders

Supported builder images for Google Cloud Build

cotools

functional tools for cooperative multitasking.

dbt-core

dbt (data build tool) is a command line tool that enables data analysts and engineers to transform data in their warehouse more effectively.

dotfiles

Fling

Fling media to a ChromeCast device

git-cl

a git-command for integrating reviews on Rietveld

google-code-issues-migrator

A simple script to migrate issues from google code to github.

incubator-airflow

Apache Airflow (Incubating)

motility

PyGithub

Python library implementing the full Github API v3

RstPreview

RstPreview - a SublimeText plugin to view RST files in your browser.

scikit-learn

scikit-learn: machine learning in Python

vaderSentiment

VADER Sentiment Analysis. VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool that is specifically attuned to sentiments expressed in social media, and works well on texts from other domains.