Jacob Beal's repositories
BioCompiler
Archival copy of Proto BioCompiler code
iGEM-Vectors
Package of vectors currently in use at iGEM
TASBEFlowAnalytics
Flow cytometry unit conversion and analytics
biopython
Official git repository for Biopython (originally converted from CVS)
DNAWeaver_SynBioCAD
Command-Line version of DNAWeaver
doebase
Basic DoE (Design of Experiments) routines for metabolic pathway design
functional-synbio-eg
An example repository for a functional synthetic biology package
iGEM-distribution
Repository for collective design of an iGEM DNA distribution
jakebeal.github.io
Personal website
LCRGenie
LCRGenie
pySBOL3
Native python implementation of SBOL 3.0 specification
pysbol3_playground
Playing around with pysbol3
Ribosome-Binding-Site-Calculator-v1.0
The Ribosome Binding Site (RBS) Calculator can predict the translation initiation rate of a protein coding sequence in bacteria and design synthetic RBS sequences to rationally control the translation initiation rate. It is used to design synthetic biological systems.
SalisLabCode
Models, design algorithms, and other software related to Salis lab publications
SBOL-examples
A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.
SBOL-utilities
Command-line utilities and scripts for manipulating SBOL data
sbol3-use-cases
Descriptions, examples, and code showing how SBOL 3 can be applied to various use cases
SEED-Workshop-2018
Materials for the Software for Synthetic Biology Workflows Workshop
setup-graphviz
▶️ GitHub Action to set up Graphviz cross-platform(Linux, macOS, Windows).
talks-and-tutorials
Talk and tutorial content for website
TASBEFlowAnalytics-Tutorial
Tutorial for how to use TASBEFlowAnalytics software