PhilYang's repositories
ArchR
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
bioc2020trajectories
Trajectory inference and differential expression over multiple conditions in scRNA-seq
CellChat
R toolkit for inference and analysis of cell-cell communication from single-cell data
celltalker
Inference of cell-cell communication from single-cell RNAseq data
cheatsheets
RStudio Cheat Sheets
clusterProfiler
:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters
damage_repair
Genome-wide DNA damage and excision repair maps
enrichplot
Visualization of Functional Enrichment Result
ggmsa
:traffic_light: Visualizing pubication-quality multiple sequence alignment using ggplot2
ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
hopr
This is the development site for Hands-On Programming with R, a book that teaches how to program in R, with hands-on examples. Read the book at https://rstudio-education.github.io/hopr.
IHCount
IHC-image analysis workflow
mc3_icgc_variant_pipeline
Variant analysis pipeline to compare the public PCAWG and MC3 mutation files generated by ICGC and TCGA
nextflow
A DSL for data-driven computational pipelines
OSCABase
Single-cell-related content for the OSCA Book.
pmbio.org
Website for the precision medicine workshop
scell_lung_adenocarcinoma
This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
seurat-data
Dataset distribution for Seurat
sscClust
simpler single cell RNAseq data clustering
STARTRAC
STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
xCell
Cell types enrichment analysis