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Alex Bae (jabae)

jabae

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Twitter:@jalex_bae

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Alex Bae's repositories

detectEM

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Cmito

Mitochondria detection in C. elegans EM images.

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Cnapse

Automated synapse detection in C. elegans EM images.

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CMontage

Montaging for C. elegans EM image dataset

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jabae.github.io

Personal website

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jabae.github.io_old

Personal website

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Augmentor

Data augmentation for training 3D convolutional nets

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CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

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datajoint_seung

Datajoint databases in Seung Lab.

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ease

EM-Assisted Sources Extraction

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igneous

Python pipeline for Neuroglancer compatible Downsampling, Meshing, Remapping, and more. Originally by Nacho and Will.

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kimimaro

Skeletonize densely labeled 3D image segmentations with TEASAR.

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SEAMLeSS

SEAMLeSS (under active development)

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Yim-Choe-Bae-et_al-2024

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