Jing Gu's repositories
AI_Curriculum
Open Deep Learning and Reinforcement Learning lectures from top Universities like Stanford, MIT, UC Berkeley.
analysis_pipelines
Analysis pipelines for statistical genetic analysis
bioworkflows
In-house computational biology workflows at Columbia Neurology
lung_lymph_scMultiomics
research websites
ComplexHeatmap
Make Complex Heatmaps
ctwas
package for the causal TWAS project
finemappeR
https://aselewa.github.io/finemappeR/
finemapping-pipeline-1
Statistical fine-mapping pipeline in FinnGen
finemapr
Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF
focus
FOCUS: Fine-mapping Of CaUsal gene Sets
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
funcFinemapping
Website for the project
heart_atlas
heart atlas analysis in R
mapgen
R package to perform gene mapping using functionally-informed genetic fine mapping
methylpy
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
mixqtl
Total and allele specific read based cis-QTL, fine-mapping, and prediction
MSscRNAseq2019
Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schafflick1, Xu, Hartlehnert1 et. al
partition_heritability
Summer I rotation project
personal-website
Code that'll help you kickstart a personal website that showcases your work as a software developer.
pipelines
Analytical tools and pipelines for bulk and single cell epigenomic and human genetic data
R-large-scale
Materials for RCC workshop, "Large-scale data analysis in R."
Roulette
A mutation rate model at the basepair resolution identifies the mutagenic effect of Polymerase III transcription
SCENT
Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA
sceptre
Robustly infer regulatory relationships in single-cell CRISPR screens.