Izaak M.'s repositories
cookiecutter
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
image-sorter
Small project for sorting images in a folder into a number of label categories which can be specified by the user.
izaakm.github.io
Public
jail-functional-partitioning
Functional Partitioning: A Software Package for RWR-based Gene Cluster Identification
kegg-kgml-parser-python
Create a networkx.DiGraph object from a KEGG pathway file, with python
dynamicTreeCut
Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.
fish
One fish, Two fish
hazenlab-qiime2phylo
a function that reads qiime2 output files into a phyloseq object
jail-kbase-exascale-data
Data repo for the Exascale collaboration between KBase and the Jacobson lab at ORNL
jail-kbase-relation-engine
Repository containing the KBase Relation Engine API, specs, and other related files.
make-project-script
A script for creating a new project directory.
pandoc-letter
Pandoc template for writing letters in markdown
presentations
Presentations
pyinstapaper
A Python wrapper for the full Instapaper API.
workshop-project-organization
Project Organization and Data Management