Ivar Thokle Hovden's repositories
epi_corrections
Pipeline for correction of magnetic susceptibility induced geometric and intensity artefacts in Dynamic Susceptibility Contrast (DSC) Echo-Planar Imaging (EPI) Magnetic Resonance Imaging (MRI) images. The correction methods used are FSL TOPUP and EPIC
cancer-sim
Simulating displacement of tissue in the brain caused by tumor growth or treatment
IN9400_exercises
Exercises and solutions from the course "Machine Learning for Image Analysis" - IN9400 (PhD version) / IN5400 (MSc version)
opticalflow-bcond
Examining the boundary conditions for the clinical relevance of Optical Flow displacement estimation on brains with tumor
ansible
Ansible jobs for use on himlar
ants-bcond
Examining the boundary conditions for the clinical relevance of ANTs SyN displacement estimation on brains with tumor
cancer-sim-search
Robust monitoring cancer and treatment related displacements in the brain on longitudinal MRI scans
cancer-sim-viz
Visualizing output from cancer-sim and cancer-sim-search by leveraging the power of WebGL
Curation
This repository contains all curation related scripts.
ddns
A self-hosted Dynamic DNS solution similar to DynDNS or NO-IP
docker-stacks
Opinionated stacks of ready-to-run Jupyter applications in Docker.
docker_auto_install_script
Bash script that installs the latest Docker Community Edition
docs-enduser
NREC enduser documentation
fs2CyborgPreprocessing
Real-time preprocessing of raw electrode voltage stream, using functional streams 2 (fs2) in Scala.
fs2FileToTCPSocketTextStream
Send String contents from a CSV file to a TCP Socket using Functional Streams 2 for Scala
FYS-KJM9740
Lecture material and exercises for the course MR-theory and medical diagnostics FYS-KJM9740 (PhD version) / FYS-KJM4740 (Master version), Spring 2019
himlar
himlar m. plural indefinite of himmel
himlarcli
Himlar command line tool
iaas
IaaS project documentation
learning_c_cpp
My collection of useful code snippets when learning/refreshing C/C++ based on various toturials and own experience
lightning-scala
Scala client for the Lightning data visualization server (WIP)
manualCyborgPreprocessing
A collection of script and guides to complement fs2CyborgPreprocessing
mri-rbf-time
Various scripts used for longitudinal analysis of patients with Glioblastoma
puppetlabs-mysql
MySQL Puppet Module / Manifests + Types & Providers
scalasignal
Signal Processing in Scala
spimagine-jupyter-docker
spimagine Python volume rendering on CPU with Jupyter notebook
vid2fft
SOL4Py PyQt5 OpenCV program demonstrating 2D Discrete Fourier Transform and square filtering in frequency domain of your webcam