venu's repositories
MachineLearning-A2Z
ML Roadmap 🛣️📌⏳
DataScience-Projects
ML/DS projects with a blogpost 📝 ✒️ @ https://itsvenu.github.io/
Detect_Homopolymer
Script detects whether the variant called from NGS data is in Homopolymer site on reference genome(hg19).
SequenceMiner
Connects to online databases - PDB, PFAM, RFAM, EMBL, PROSITE, UNIPROT.
Signatures-Manuscript
Mutational Signatures extraction - Pediatric cancers
Protein-contact-map
Neighboring residues of each residue within 8A distance.
another-test
just testinggg
CenterOfMass-Protein
Coordinates of center of mass and distance of each residue from COM.
ConsensusSequence
Finding the most likely common ancestor / a consensus sequence of a group of sequences.
deBruijn_assembly
k-mer based assembly of sequence by the help of deBruijn grpah
HalfLife-Protein
Protein in vivo half life: N-end Rule
inTAD-shiny
inTAD-shiny development
k-merStats-Genomics
Scripts useful analyzing genomic sequences in terms of k-mers
MYC-Manuscript
Specific analysis code bits for JE,VT 2020 (excluding custom pipelines)
NT-SequenceAnalysis
Various scripts for analysing the nucleotide sequences. Number of nucleotides, GC content of sequences etc.
Protein-DistanceMeasures
Evidence of protein CT folding from structure.
Protein-GRAVY
Protein Grand Average of Hydropathy.
ProteinCompactness
Compactness of a protein conformation through Radius of Gyration & Moment of Inertia
ProteinStats
Amino acid composition of a protein sequence
TerminalHydrophobicity
Terminal hydrophobicity of a sequence - Important for determination of CT protein folding