itrus / bash-scripts-NGS

Bash scripts for NGS datasets

bash-scripts-NGS

Bash scripts for NGS datasets

1. main - scripts suitable for different projects
2. small - unique and small tasks
3. iVAR - SNVs detection in DNA and RNA viruses
4. RNA-seq - transcriptome analysis
5. De-novo - Non-targeted de novo assembly of viral genome
6. stranded - working with stranded data
7. deduplication - Deduplication of similar reads created by PCR
8. microbiome - Microbiome analysis (STUB)
9. demultiplexing - Demultiplexing reads