Isy89

cfDNA_midpoint_coverage

cfDNA

cfDNA analysis workflow

seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

streamlit-echarts

A Streamlit component to render ECharts.

sgkit

Scalable genetics toolkit

Network-Analysis-Made-Simple

An introduction to network analysis and applied graph theory using Python and NetworkX

kpa

KPA - Knowledge Pods Approach

reactpy

It's React, but in Python

ivy

Convert Machine Learning Code Between Frameworks

biobear

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

AGEpy

Bioinformatics tools for Python

python-click-autocomplete-example

Example on how to set up shell autocomplete for Python scripts.

textual

The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.

pygwalker

PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

awesome-courses

:books: List of awesome university courses for learning Computer Science!

Python

All Algorithms implemented in Python

DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

YouPlot

A command line tool that draw plots on the terminal.

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

conda-pack

Package conda environments for redistribution

book

CHM13

The complete sequence of a human genome

NGmerge

Merging paired-end reads and removing adapters

igv-jupyterlab

Integrate Genome Viewer for JupyterLab 3

pyGenomeTracks

python module to plot beautiful and highly customizable genome browser tracks

kedro

Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.

modular-spaceflights

This is a prototype version of the Kedro spaceflights tutorial that utilises the modular pipelines pattern.