Beast code in Giters

Ivan Sovic's repositories

Simple FPGA-based Wavelet Image Compression

Language:VHDL1200

Simple DP implementation of Needleman-Wunsch for generating CIGAR strings for sequence alignments.

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Scripts to compute simple consensus (SNPs, insertions, deletions) from mpileup by majority vote.

Language:Python4 2 2

UCSC Nanopore

Language:PythonMIT300

cgmemtime measures the high-water RSS+CACHE memory usage of a process and its descendant processes.

Language:C100

E-value calculation with predefined BLAST parameters.

Language:CMIT100

C3PU is a 16-bit soft-core processor implemented in VHDL using Xilinx ISE Webpack.

Language:C000

isRes is a simple Python script for measuring resource consumption on Linux platforms.

Language:Python000

Scripts for benchmarking tools for sequence overlapping.

Language:PythonMIT000

Simple consensus for Ra assembler's raw contig output.

Language:PythonMIT000

Language:PythonMIT000

Scripts for testing and validating GraphMap

Language:PythonMIT000

Wrappers for alignment tools.

Language:Python000