Human Immune Monitoring Center at Mount Sinai

clustergrammer2

"Dimensionality-increasing" data visualization tool and interactive WebGL Jupyter widget built for single-cell data.

clustergrammer2-notebooks

Examples using Clustergrammer2 to explore high-dimensional datasets.

visium-clustergrammer2

Spatial Transcriptomics Dashboard

clustergrammer-gl

WebGL Clustergrammer JavaScript Library

codex_dashboard

Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data

covid-19_sinai_reviews

cytutils

Cytometry quality control and reproducibility utilities

cellranger-aws-pipeline-docs

rapids-single-cell-examples

Examples of single-cell genomic analysis accelerated with RAPIDS

visium_analysis

biomed-scientist-against-visa-bans

clustergrammer-binder-upload-test

clustergrammer-widget2-deprecated

clustergrammer2-signatures

Collection of cell type and cell state signatures built to easily integrate with Clustergrammer2 single cell toolkit.

clustergrammer2-test

clustergrammer2_test

codex_spatial_spleen

covid-19_tenoever

gallery

Configuration for deploying Voila Gallery

gaussian-density

Using voila with bqplot to visualize gaussian density

himc_dockers

Docker builds for all tools used by HIMC

himc_helper_functions

LegendScreen_CyTOF

LuminexApp

LuminexTools

Luminex related processing pipeline

OlinkApp

recursive_gsea

VEGF_A_Hormigo

voila

From Jupyter notebooks to standalone web applications and dashboards

voila-hello-world-example

A Hello World application to get started with voila