Sam Isaacson's repositories
Catalyst.jl
DiffEq related functionality for defining biological models
StochasticDiffEq.jl
DiffEq solvers for stochastic differential equations
BifurcationKit.jl
A Julia package to perform Bifurcation Analysis
Catalyst-Fast-Biochemical-Modeling-with-Julia
Repository containing code accompanying the "Catalyst: Fast Biochemical Modeling with Julia" article.
DiffEqBase.jl
The lightweight Base library for shared types and functionality.
DiffEqCallbacks.jl
A library of useful callbacks for hybrid scientific machine learning (SciML) with augmented differential equation solvers
DiffEqDocs.jl
Documentation for the DiffEq ecosystem
DiffEqGPU.jl
GPU-acceleration routines for DifferentialEquations.jl and the broader SciML scientific machine learning ecosystem
DiffEqJump.jl
Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates
DiffEqNoiseProcess.jl
A library of noise processes for stochastic systems like stochastic differential equations (SDEs) and other systems that are present in scientific machine learning (SciML)
DiffEqProblemLibrary.jl
A library of premade problems for examples and testing
DifferentialEquations.jl
Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components
FiniteStateProjection.jl
Finite State Projection algorithms for chemical reaction networks
juliadiffeq.github.io
The JuliaDiffEq Website
Latexify.jl
Convert julia objects to LaTeX equations, arrays or other environments.
ModelingToolkit.jl
A toolkit for modeling and creating DSLs for Scientific Computing in Julia
OrdinaryDiffEq.jl
DiffEq solvers for ordinary differential equations
ReactionNetworkImporters.jl
Catalyst.jl importers for various reaction network file formats.
SciMLBase.jl
The Base interface of the SciML ecosystem
SciMLBenchmarks.jl
Benchmarks for the DiffEq Solvers
SciMLTutorials.jl
Tutorials for using the DiffEq ecosystem
Symbolics.jl
A fast and modern CAS for a fast and modern language.