iqbal-lab

Mykrobe-predictor

Antibiotic resistance predictions in minutes on a laptop

cortex

reference free variant assembly

eval_wgs_for_public_health

Datasets, truthsets, auto-analysis for evaluating WGS pipelines for public health needs. Starting with TB

good_background_papers

poligraph

Polish a nanopore assembly using Illumina reads

toypy

Old man slowly learns Python; place I can ask basic questions

useful_R

Stuff I want to be able to find

allele_validator

Simple measurement of true positive call ratio from a VCF file: map alleles to a truth assembly

ASM_NGS_conf_report

ASM_rapid_ngs_challenge_2015

Repository for what we did for our entry, and how to reproduce it

denovo-assembly-tutorial

A tutorial for learning de novo assembly

mediator

a medium inspired jekyll theme

mwsfs

messing with baumdicker dispensable gene sfs

outbryk

pg

Playground. trying out stuff I want to learn or used to know

schemas

Work on data models and APIs for Genomic data.

templates

Basic templates for scripts

wt_nanopore

Private repo for shared scripts/programs for analysing Oxford Nanopore data

2020-cov-tracing

Combined scenarios for COVID transmission

BitArray

C bit array structs and methods

code-review-examples

datasciencelabs2022

Fork of Rafarl Irrizarry's BST 260: Introduction to Data Science Fall 2022 Course Repository

iqbal-lab.github.io

Build a Jekyll blog in minutes, without touching the command line.

la_dbg

Barebones for a C++ repo with cmake and googletest, and a status bar from travis

minimap

Experimental tool to find approximate mapping positions between long sequences

paper-2016-vBWT-gramtools-WABI

Scripts and files for 2016 paper accepted at WABI on the vBWT encoding of genetic variation

toy-stl-explore

white-paper

:newspaper: Jekyll theme used in my blog gotchacode.com