ipstone

microemacs

Jasspa's microemacs

ipfun

modules

ruby-podcast

simple library and command line utility for creating podcast files from a directory of mp3 files. Fix ruby3 error

awesome-streamerrc

Dotfiles for various streamers on Twitch.

biallelic_hr

Source code and data for "Pan-cancer analysis of bi-allelic alterations in homologous recombination (HR) DNA repair genes" ; See manuscript @

cbm_temp_announcement

Temporary announcement page with meeting place internet update

chrome-reader-extension

Google Chrome extension built in react for a better reading experience.

data

A data API for molecular biology

debugging

Talk about general debugging strategies. How to be less confused and frustrated.

dots

EnhancedVolcanoJitter

Publication-ready volcano plots with enhanced colouring and labeling

goleft

goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary

gospel2020

gospel2020

homebrew-core

🍻 Default formulae for the missing package manager for macOS

hugoinaction

Website for and source code accompanying Hugo In Action

kjv

Read the Word of God from your terminal

ListOfGithubLists

List of github lists

maftools

a branch of maftools with randSeed, and nRun to extractSignatures function

MutationalPatterns

R package for extracting and visualizing mutational patterns in base substitution catalogues

NeoantigenEditing

study neoantigen

nf-bam2fastq

Nextflow-based BAM-to-FASTQ conversion and FASTQ-sorting workflow.

pubmed_miner

A demo on retrieving and clustering pubmed abstracts

rloop_genome_instability

code acompanying Rloop genome instability paper

SGZ

SigMA

Mutational signature analysis for low statistics SNV data

signature.tools.lib

R package containing useful functions for mutational signature analysis

SigProfilerMatrixGenerator

SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

TumorType-WGS

Classifying tumor types based on Whole Genome Sequencing (WGS) data