Gerres cinereus in Aldabra Atoll
pieterprovoost opened this issue · comments
We have detections of Gerres cinereus which is a central American species in Aldabra, while vsearch points to Gerres longirostris.
organismQuantity occurrenceStatus recordedBy samplingProtocol sampleSizeValue
16 58686 present Hugo Gante eDNA expeditions citizen science sampling 748148
organismQuantityType sampleSizeUnit kingdom phylum class order family
16 DNA Sequence reads DNA Sequence reads Animalia Chordata Teleostei Eupercaria incertae sedis Gerreidae
genus scientificName scientificNameID taxonRank
16 Gerres Gerres cinereus urn:lsid:marinespecies.org:taxname:276954 species
identificationRemarks
16 Identification based on the RDP classifier at the confidence level 0.8: taxonomy sk__Eukaryota;k__Metazoa;p__Chordata;c__Actinopteri;o__Gerreiformes;f__Gerreidae;g__Gerres;s__Gerres_cinereus, confidences 1;1;1;1;0.98;0.98;0.98;0.8. Confirmation with VSEARCH against the 12S_ncbi_CRABS_202311 database at 0.97 similarity: hits LC499282, identities 98.2, taxonomy Gerres_longirostris, consensus Eukaryota;Chordata;Actinopteri;Gerreiformes;Gerreidae;Gerres;Gerres_longirostris.
occurrenceID materialSampleID locality decimalLongitude decimalLatitude sampleSize
16 asv.10_EE0488_12s_mifish EE0488 Settlement beach 46.20605 -9.400901 1500
higherGeography verbatimIdentification target_gene pcr_primer_forward pcr_primer_reverse
16 Aldabra Atoll <NA> 12S GTYGGTAAAWCTCGTGCCAGC CATAGTGGGGTATCTAATCCYAGTTTG
pcr_primer_name_forward pcr_primer_name_reverse pcr_primer_reference lib_layout seq_meth
16 MiFish-UE-F MiFish-UE-R doi:10.1098/rsos.150088 Paired NovaSeq6000
DNA_sequence
16 GTCGGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGGCCCAAGTTGACAGCTTCCGGCGTAAAGCGTGGTTAAGGTGAACCCAGACTAAAGTCGAACTCCTTCAAGGCCGTTTAACGTGTTCGAAACGGAGAAGCTCAACTACGAAAGTGACTTTACAAACCTGATCCCACGAAAGCTATGGCA