OBIS's repositories
PacMAN-pipeline
Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project
edna-tracker-data
GitHub action for transforming eDNA samples metadata from PlutoF
mwhs-data-mobilization
Biodiversity data mobilization for marine World Heritage sites.
edna-results
Processed eDNA Expeditions metabarcoding results
edna-expeditions
Technical documentation for the eDNA Expeditions project
jupyterhub-deploy-docker
Reference deployment of JupyterHub with docker
mpaeu_map_platform
A platform for hosting SDM maps produced by OBIS
obis-therm
Produces dataset of sea temperature matched to occurrence records
rspeedy
Species distribution summaries.
sampling-effort-depth
This repo contains script to generated hexagonal grids of sampling effort (number of OBIS records) by depth layer.
species-thermal-limits
Experimenting methods to estimate species thermal limits based on occurrence data
speedy-maps
Mapbox GL JS visualization of speedy results