invertome

crustome

CrusTome: A transcriptome database resource for large-scale analyses across Crustacea. Repository contains example script, links to database download, and supplementary files from manuscript.

SICB2023_Workshop

Information and materials for SICB 2023's "Exploring -omics beyond assembly and general annotation for non-model organisms" workshop.

scripts

Helper scripts for a variety of tasks

electricfish

insectome

InsecTome: A transcriptome database resource for large-scale analyses across Hexapoda

invertome.github.io

Exploring the diversity within non traditional model organisms | Omics Tools & Analyses | Genomics, Epigenomics, Metagenomics, Transcriptomics

jellytome

JellyTome: A transcriptome database resource for large-scale analyses across Cnidaria & Ctenophora

machinelearning_testing

Testing. General classifier and training ML scripts written in Python, using Random Forest, SVM, and Deep Learning algorithms.

misc

Miscelaneous scripts

PIA2

Modified version of the Phylogenetically Informed Annotation tool (Speiser et al., 2014)

ticktome

TickTome: A transcriptome database resource for large-scale analyses across Parasitiformes

YO_2024