International Brain Laboratory

ibllib

IBL core shared libraries

mtscomp

Multichannel time series lossless compression in pure Python based on NumPy and zlib

iblapps

pyqt5 dependent applications for IBL sessions

iblrig

Main repository for IBL rig code

ONE

Open Neurophysiology Environment

paper-brain-wide-map

Code related to the brainwide map paper

ibl-neuropixel

Collection of tools to handle Neuropixel 1.0 and 2.0 data

iblenv

Unified environment and Issue tracker for all IBL

pykilosort

[WIP] Python port of Kilosort 2

iblvideo

Pose estimation for the IBL dataset

iblscripts

Deployment scripts for ibl

viewephys

Neuropixel raw data viewer

prior-localization

Project seeking to localize encoding of the task prior in the brain

ibl-viz

Gallery of visualizations and associated code

iblbrainviewer

IBL API for atlas web

paper-ephys-atlas

Code related to the electrophysiology atlas paper

paper-reproducible-ephys

project_extraction

Extraction code for IBL satellite projects eg. U19 / personal projects

bwm_dmn

default mode network manifold analysis

ephys-atlas-web

ibl-photometry

A collection of methods and tools for experimental photometry data

ibl-viz-earth

iblalyx

iblgovernance

IBL governance policies and documents

iblutil

Small utilities with minimal dependencies

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

reveal

Tools to build reveal web-based presentations for scientific visualisations

spike-holes

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

website

Public website prototype