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WSI-finetuning

This is the official repository for our CVPR 2023 paper 'Task-Specific Fine-Tuning via Variational Information Bottleneck for Weakly-Supervised Pathology Whole Slide Image Classification'.

ICLR_CAMIL

tcga-path-reports

TCGA Pathology Reports in Machine Readable Text

WSI_FiVE

Generalizable Whole Slide Image Classification with Fine-Grained Visual-Semantic Interaction

UNI

Towards a general-purpose foundation model for computational pathology - Nature Medicine

benchmark-ssl-pathology

Official repository of Benchmarking Self-Supervised Learning on Diverse Pathology Datasets

ACMIL

Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification (ECCV2024)

PseMix

[IEEE TMI 2024] Pseudo-Bag Mixup Augmentation for Multiple Instance Learning-Based Whole Slide Image Classification

MS-DA-MIL-CNN

Multi-scale Domain-adversarial Multiple Instance Learning CNN (CVPR2020)

DTFD-MIL

FRMIL

dsmil-wsi

DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image

RankMix

[CVPR2023] RankMix-Data-Augmentation-for-Weakly-Supervised-Learning-of-Classifying-Whole-Slide-Images

vit-explain

Explainability for Vision Transformers

SLiMe

1-shot image segmentation using Stable Diffusion

GNNExplainer-Tutorial

gnn-model-explainer

gnn explainer

gdc-client

GDC Data Transfer Tool

CAMEL

The colorectal adenoma dataset with image-level labels for weakly supervised learning.

iguana

Interpretable Gland-Graph Networks

histocartography

A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.

seg-gini

SEGmentation using Graphs with Inexact aNd Incomplete labels

Mixed_supervision

MICCAI2022: Multiple Instance Learning with Mixed Supervision in Gleason Grading.

WSITools

Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

awesome-transformers-in-medical-imaging

A collection of resources on applications of Transformers in Medical Imaging.

RetCCL

TransPath

TIGER_SEG-DET

segmentation and detection methods

BiomedGPT

BiomedGPT: A Unified and Generalist Biomedical Generative Pre-trained Transformer for Vision, Language, and Multimodal Tasks

scikit-llm

Seamlessly integrate LLMs into scikit-learn.