indigoblueraspberry's repositories
alfred-similar-image-search
Google Image searches based on local files via Alfred
Alternative-Splicing-Tools
A list of alternative splicing analysis resources
Automatic-Youtube-Reddit-Text-To-Speech-Video-Generator-and-Uploader
A series of 3 programs that will automatically receive scripts from Reddit, allow the user to edit them, then be sent off to a video generator where they will be uploaded to YouTube automatically.
awesome-nextflow
A curated list of nextflow based pipelines
BIOF076-Visualization-with-R
Course website for BIOF076
bioinformatics-workflows
minimal example implementations for bioinformatics workflow managers
bonito
Convolution Basecaller for Oxford Nanopore Reads
caltha
A python package to process UMI tagged mixed amplicon metabarcoding data.
Capslock
Make Capslock Great Again!
CyclomicsManuscript
Data analysis scripts used to process and plot the data for the manuscript of CyclomicsSeq.
fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
history-sync
An oh-my-zsh plugin for GPG encrypted internet synchronised Zsh history, with Git.
inkscape-figures
Inkscape figure manager
MFP
Mollecular Functional Portraits
MuSTA
MuSTA: Multi-Sample Transcriptome Assembly for long-read isoform sequencing
RCK
RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
RCK-1
RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
rerio
Research release basecalling models and configurations
sRNAtoolbox
small RNA analysis programs: standalone jar files (sRNAbench, sRNAde, etc), manuals and Docker image
SVExpress
SVExpress is a suite of computational tools (implemented in Excel VBA and R) that allows one to identify Structural Variant (SV) breakpoint-to-expression associations across a set of cancer samples profiled for both SVs and gene transcription.
TCR-BCR-seq-analysis
T/B cell receptor sequencing analysis notes
UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
vim-adventures-rev
A reverse engineered Node.js version of the Vim Adventures game.
zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs