indexofire / enterotoxin

Staphylococcus aureus enterotoxin database for abricate

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Staphylococcus aureus enterotoxin database

This is a custom database for abricate to identify enterotoxin genes in S. aureus.

Installation

If abricate was installed in conda environment name as abricate, you can install like this:

$ git clone https://github.com/enterotoxin
$ cd enterotoxin
$ conda activate abricate
(abricate)$ cp -R enterotoxin $CONDA_PREFIX/db/
(abricate)$ abricate --setupdb

Usage

scanning genomes

$ abricate --db enterotoxin genomes.fasta

About

Staphylococcus aureus enterotoxin database for abricate

License:MIT License