Spanish National Bioinformatics Institute

trimal

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

WfExS-backend

Workflow Execution Service Backend

fega-mm

benchmarking-data-model

OpenEBench Benchmarking Data Model repository

bench_event_api

bench_event_api

bench_event_table

openEBench-nuxt

Vue Client for the OpenEBench Micro Frontends

python-extended-json-schema-validator

vre_template_tool_dockerized

beacon-TRE

Reference Implementation Beacon that works with RabbitMQ for Trusted Research Environments (TREs).

crypt4ghfs

A fuse layer showing Crypt4GH encrypted files as if they were decrypted

dockerized_vre

FAIRsoft_indicators

Specification of FAIRsoft indicators, by OpenEBench.

hello-workflows

Repository to store toy "hello world"-like sample workflows for different workflow engines. Mainly to be consumed by WfExS tests

InSoLiTo

Inferring Social Life of Tools (InSoLiTo) is an OpenEBench project that provide guidance on scientific tools worth benchmarking

licenses-mapping

A tool to map strings to SPDX licenses names or IDs.

lrgasp-challenge-3_benchmarking_docker

oeb-project-markdown-editor

OpenEBench Scientific summary markdown editor for projects

oeb-visualizations

Library of data visualizations for OpenEBench

oeb-visualizations-demo

Web showing examples of components in OEB Visualizations library

oeb-widgets

OEB-Widgets-Visualization-Demo

Demonstration of chart widgets before integration into OpenEBench. With Plotly.

oeb_general_docs

OEB_level2_data_migration

openebench-playground-community

This repository is going to hold the details of the playground community, created to ease the adoption of OpenEBench Scientific standards and concepts

OpenEBench_scientific_visualizer

ro-terms-wfexs

Repository for creating new terms for Research Objects

uptime-chart-OEB

Standalone widget to display the uptime of a tool at OpenEBench.

vre-process_nextflow-executor

Nexflow workflow job executor (for OpenEBench VRE installation)

workflow-run-crate

Workflow Run RO-Crate profile