imgergely

Cytocipher

Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are significantly different to one another in terms of their gene expression.

auto-cpufreq

Automatic CPU speed & power optimizer for Linux

TLP

TLP - Optimize Linux Laptop Battery Life

fanc

FAN-C: Framework for the ANalysis of C-like data

IAS

Integration Analysis System

throttled

Workaround for Intel throttling issues in Linux.

xTea

Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics

somrit

Somatic Retrotransposon Insertion Toolkit

singleCellTK

Interactively analyze single cell genomic data

scRNA-seq_online

thorium

Chromium fork named after radioactive element No. 90. Windows and MacOS/Raspi/Android/Special builds are in different repositories, links are towards the top of the README.md.

icecream

🍦 Never use print() to debug again.

AutoEq

Automatic headphone equalization from frequency responses

pydoro

🍅 pydoro - Terminal Pomodoro Timer

RMRB

This is an archive version of old RepBase library (v20170127) for RepeatMasker.

pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

genomepy

genes and genomes at your fingertips

parasail

Pairwise Sequence Alignment Library

scikit-bio

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

pype

A Python Package for PheWAS Execution, Visualization, and Analysis

biobear

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

polars

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

swalign

Smith-Waterman local aligner

NGmerge

Merging paired-end reads and removing adapters

ssw_aligner

Python implementation of Striped Smith-Waterman Algorithm

handwriting-synthesis

Handwriting Synthesis with RNNs ✏️

pyliftover

Pure-python implementation of UCSC liftOver genome coordinate conversion

pyensembl

Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

RaMP-DB

input-remapper

🎮 ⌨ An easy to use tool to change the behaviour of your input devices.