unair
Here we describe how to run the R code. The R code is intended to be parallelized using the R package batchtools.
The init-global.R file contains initializations required for all other files. Please use it to set the path to the local main directory. Please firstly set your main directory before running the R code.
Also configure further required batchtools' resources in the head of the start_jobs.R file. You can optionally use our configuration file batchtools.conf.R and adjust it to your specifications or use the one of the batchtools ' template, that available here. Specify partition (or queue) and the account to be used on your cluster with the corresponding variables in start_jobs.R.
All results presented in the article can be reproduced by running the codes in each directory following the order of the numbers prefixing their names.
Data will be downloaded and saved into directory data.
To reproduce all results:
- Configure the
init-global.R - Start the jobs using the
start_jobs.Rfile
Make sure all jobs have completely run
- Resume all results using the
resume_results.Rfile