Irina Armean's repositories
VarDict
VarDict
ensembl-variation
The Ensembl Variation Perl API and SQL schema
ensembl-datacheck
Code for checking Ensembl databases during release production
public-plugins
Plugins for an Ensembl website
VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)
maxent-ppi
Evaluation of ontology annotation for protein-protein interactions using Maximum Entropy
ensembl-vep
The Variant Effect Predictor predicts the functional effects of genomic variants
ensembl-webcode
The code to run an Ensembl website
ensembl-io
File parsing and writing code for Ensembl
ensembl-rest
Language agnostic RESTful data access to Ensembl data over HTTP
gwc
Method for generating genome-wide constraint metrics comparing observed to expected variation. Expected is calculated using an updated mutation rate model with sequence context + 32 additional features.
lrg-code
Repository containing the scripts and API to generate and store the LRGs
ensj-healthcheck
Ensembl's Automated QC Framework
ensembl-production
Ensembl Production code