ilevantis

zotero-tiddly

hacks to get zotero and Tiddlywiki working together

dvorfs

Tool for mining endogenous viral elements from eukaryotic genomes.

snakestart

Set up a basic conda env with snakemake and a sensible directory structure

venn

Bash wrapper for simple set operations using sort and uniq

getseq

CLI script to fetch sequences from a multifasta file

codger

Toolkit for manipulating explicit codon alignments with frameshifts

bio-labware

fishconf

genomeview

An extensible python-based genomics visualization engine

logomaker

Software for the visualization of sequence-function relationships

qm_snakestart

Initialise a snakemake project to be run on the QMUL cluster

ReannTE

Scripts to help transposable elements consensus sequences curation

YAAP

Yet Another Amplicon denoising Pipeline, is a pipeline to analyse metabarcoding amplicon data. It performs QC, adapter removal, denoising and ZOTU table construction