FISH Oligo design
Chorus2 is released. https://github.com/zhangtaolab/Chorus2
Citation
Zhang T†*, Liu GQ†, Zhao HN, Braz G.T, Jiang JM*. Chorus2: design of genome-scale oligonucleotide-based probes for fluorescence in situ hybridization. Plant Biotechnology Journal (2021) DOI: 10.1111/pbi.13610 (Accepted)
Oligo design with Chorus
- Populus: Xin H†, Zhang T†, Han Y, Wu YF, Shi JS, Xi ML*, and Jiang JM. (2018) Chromosome painting and comparative physical mapping of the sex chromosomes in Populus tomentosa and Populus deltoides. Chromosoma doi.org/10.1007/s00412-018-0664-y
- Potato, Tomato, Eggplant, Tzimbalo and Pepper: Braz GT†, He L†, Zhao HN†, Zhang T†, Semrau K, Rouillard JM, Torres GA, Jiang JM*. Comparative oligo-FISH mapping: an efficient and powerful methodology to reveal karyotypic and chromosomal evolution. Genetics 2018, 208(2), 513-523.
- Cucumber, Muskmelon and other Cucumis: Han YH†, Zhang T†, Thammapichai P, Weng YQ, and Jiang JM*: Chromosome-specific painting in Cucumis species using bulked oligonucleotides. Genetics 2015, 200(3):771-779.
- Switchgrass, Maize, Rice, Sugarcane, Banana and etc ...
https://github.com/forrestzhang/Chorus
