ilan-gold

chrome-http2-single-file

anndata

Annotated data.

anndata-tutorials

Use cases for anndata.

autoplay

Messing around in React/Flask/MongoDB to get Autoplaying Media

benchmark-viv

Benchmarking for Viv.

cs231n

My answers to the cs231n problem sets

dask

Parallel computing with task scheduling

deck.gl

WebGL2 powered geospatial visualization layers

deck.gl-data

Data for the data visualization library deck.gl examples (https://uber.github.io/deck.gl/#/)

example-sphinx-basic

A basic Sphinx project for Read the Docs

geotiff.js

geotiff.js is a small library to parse TIFF files for visualization or analysis. It is written in pure JavaScript, and is usable in both the browser and node.js applications.

GLUE

Graph-linked unified embedding for single-cell multi-omics data integration

image_zarr_pyramid_generation

Some quick and dirty python for generating a zarr image pyramid.

luma.gl

High-performance Toolkit for WebGL-based Data Visualization

luma.gl-Multiple-Texture-Types

A repo for reproducing a luma.gl issue.

lzw-tiff-decoder

A WASM-based decoder for TIFF LZW compression.

math.gl

A 3D/WebGL math library

multigrate

Multigrate: multiomic data integration

scanpy

Single-cell analysis in Python. Scales to >1M cells.

scanpy-tutorials

Scanpy Tutorials.

scipy

SciPy library main repository

scvi-tools-skeleton

Template repository for creating novel models with scvi-tools

squidpy

Spatial Single Cell Analysis in Python

testgl_xr

A quick demo of getting an image tile of high bit-per-channel depth and rendering it in WebGL

torchquad

Numerical integration in arbitrary dimensions on the GPU using PyTorch / TF / JAX

vitessce-data

Utils for loading HuBMAP data formats

viv

Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Bio-Formats-compatible Zarr and OME-TIFF.

xarray

N-D labeled arrays and datasets in Python

xtiff

A tiny Python library for writing multi-channel TIFF stacks.

zarr.js

Javascript implementation of Zarr (found at https://zarr.readthedocs.io/en/stable/)