Yu-Chia's repositories
antifungal-linguist
A language model developed for antifungal medicine discovery. The architecture is a pre-trained T5 base model and fine-tuned using step-by-step distilling.
bio331_2021
Notes and code for Bioinformatics 2021
bioinfo-notebook
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Bioinformatics_YouTube
The Github Page with some of the information pertaining to the YouTube videos.
Demultiplex-aptamers
To demultiplex barcodes from SELEX datas and remove primers
EarlGrey_TE
Earl Grey: A fully automated TE curation and annotation pipeline
EDTA
Extensive de-novo TE Annotator
GeneticsMakie.jl
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
genomic-features-of-parthenogenetic-animals
A project for gathering and re-analysing all published asexual genomes
GWAS
Genome-wide Association Study (GWAS) Tutorial
iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
oh-know
repository for the oh-know workshop
ProjecTILs
Interpretation of T cell states using reference single-cell atlases
Ratio-Distribution-Analysis-Demo
Software implementation for The Gene Balance Hypothesis: Dosage effects in plant
SATC
Sex assignment through coverage
scRepertoire
A toolkit for single-cell immune profiling
TBtools-II
GUI/CommandLine Tool Box for biologistists to utilize NGS data.
trimmomatic
Read trimming tool for Illumina NGS data.
WGCNA_tutorial
A step-by-step tutorial for Weighted correlation network analysis (WGCNA)