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Shuoguo (iiiir)

iiiir

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Shuoguo's repositories

GRCH38_gatk_bundle

liftover version of the gatk resource bundle for the new assembling GRCH38 (primary assembling, no alt contigs or decoy sequences).

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gatk_varcall

GATK best practice variant calling pipeline

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bwamapping

bwa mapping and bwa hybrid mapping

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barcbam

Barbam to work with barcoded sequencing data

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flu_seq

Some script for handle flu senquences and trees

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gemcode

gemcode tech related scripts

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ndarpy

Scrtips to handle NDAR data sets

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pysplit

similar to UNIX split command except:

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rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

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rnaseq_tutorial_wiki

The wiki repo, with pull request enabled, for the rnaseq_tutorial

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SJM

Simple Job Manager

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ucsc_track_hub

initial commit

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unmap2fq

Short pipeline that abstract unmapped reads from a bam file and convert to fastq files (PE reads)

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wave_clus

A fast and unsupervised algorithm for spike detection and sorting using wavelets and super-paramagnetic clustering

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