Alignment track whitespace

Question

Alignment track whitespace

ryanyord opened this issue a year ago · comments

Hello,

When creating a track and using the following:

[{"name": "174545_SA31", "type": "alignment", "format": "bam", "url": "/bams/174545_SA31.markdup.sorted.bam", "indexURL": "/bams/174545_SA31.markdup.sorted.bam.bai", "showAlignments": false}

showAlignments = false , yet in the output a whitespace appears were the alignment track visual would be like in the following image:

However, It would be ideal to have it load like this:

I can get to the 2nd image by ticking and unticking the alignment track, but would love for it to display without whitespace as default.

Thank you, and appreciate the tool!

Ryan Yordanoff · Answer 1 · Wed May 17 2023 23:56:10 GMT+0800 (China Standard Time)

Figured it out, resolved the issue by setting autoHeight = True

Jim Robinson · Answer 2 · Thu May 18 2023 00:08:36 GMT+0800 (China Standard Time)

Thanks for the report. I'm going to reopen this because that shouldn't be necessary, I have been traveling and unable to get to it yet.

Jim Robinson · Answer 3 · Fri Sep 22 2023 11:24:10 GMT+0800 (China Standard Time)

This should be fixed in the latest release