igvteam

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

igv-webapp

IGV Web App

igv-notebook

Module for embedding igv.js in an IPython notebook

igv.js-flask

Example project for integrating igv.js and flask

juicebox.js

HiC contact matrix visualization

spacewalk

SpaceWalk is an application for displaying and interacting with super-resolution chromatin tracing data in 3D. SpaceWalk includes igv.js and juicebox.js instances for rapid and intuitive visual comparison and interaction between 3D data and 1D genomic data.

hic-straw

Command line and web utilities for reading .hic contact matrix files

igv-utils

igv-docs-website

Markdown-based documentation website - IGV desktop application

data-modal

A data resource browser and selector based on DataTables. Used by igv applications for selecting files from ENCODE and other data resources.

juicebox-web

circular-view

Wrapper class for JBrowse genomic circular view component

igv-ui

UI components for igv.js and related projects

igv.js-react

Example project for using igv.js with React

juicebox-notebook

circular-view-app

igv-widgets

UI widgets for igvteam applications

bgzip

cram-js

Read CRAM v3 and v2 in node or in the browser

d4server

Prototype D4 server

extractome

Creates an "extracted" genome assembly from a fasta + list of regions

google-utils

htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

igv-electron

igv-juicebox

Prototypes exploring potential igv.js <-> juicebox.js interactions.

shoebox

swcproject

SpaceWalk CLI tool to convert legacy point-cloud and ensemble files to .sw format

test-utils