igvteam / igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

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Change default display mode

RaphaelHablesreiter opened this issue · comments

Hi,

is it possible to change the default mode for display settings of the alignment track?

Many thanks!

I'm not sure which settings you are referring to, but you can use the --track-config option and use any settings available in igv.js. See the readme and https://github.com/igvteam/igv.js/wiki for more information.