Add IGV 'side-by-side' feature please.

Question

Add IGV 'side-by-side' feature please.

xiucz opened this issue 3 years ago · comments

Hi,
Thank you for your tools. In my recent fusion gene research, how about add a new feature, which can be visualized side-by-side.

Best,
xiucz

Jim Robinson · Answer 1 · Thu Jun 17 2021 11:27:22 GMT+0800 (China Standard Time)

This already exists, as your screenshot demonstrates, so I'm not sure what you are asking for.

xiucz · Answer 2 · Thu Jun 17 2021 17:42:52 GMT+0800 (China Standard Time)

@jrobinso
Thanks for your quick reply. Yes, we can visualize fusion events in a GUI window manually. But how can I do it using create_report command line in batches?

Best,
xiucz

Jim Robinson · Answer 3 · Thu Jun 17 2021 22:09:02 GMT+0800 (China Standard Time)

Ahh, of course, gotcha. You can't do that currently, its a good suggestion, I will leave this open as a request.

Jim Robinson · Answer 4 · Wed Jul 27 2022 10:03:52 GMT+0800 (China Standard Time)

@xiucz This is implemented thanks to help from @DevangThakkar . See the README for instructions, you use a "bedpe" file to define the regions instead of a vcf. This will be released in the next week.

Jim Robinson · Answer 5 · Mon Aug 01 2022 14:04:17 GMT+0800 (China Standard Time)

Released as version 1.5.0