Igors Dubanevics's repositories
demo-superset
Demo project using Apache Superset and Spotify API.
comp-biophys-research-project
A descent project structure for making and sharing science work in Computational Biophysics.
dynallo-scov2-mpro
Data and code for Computational Analysis of Dynamic Allostery and Control in the SARS-CoV-2 Main Protease
all-atom-md-cap
Reproduction of David Burnell's PhD thesis work on CAP
antechamber-tutorial
Using Antechamber to Create LEaP Input Files for Simulating Sustiva (efavirenz)-RT complex using the General Amber Force Field
artificial-pdb
Artificial PDB structures for Molecular Dynamics research
artificial-pdb-coord
Elastic Network Model (ENM) applied to artificial in silico PDB structures.
braydoncoyer
My GitHub Profile README! Learn how to build it yourself by scrolling to the bottom of the README and following the link!
bsim
Agent-based modelling tool for bacterial populations in systems and synthetic biology
CellModeller
GPU-accelerated multicellular modelling framework
cookie-cutter-research-project
An example repo for a research project
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
DFI
Dynamic Flexibility Index -- Python Library for studying structural dynamics of proteins
eQ
Agent-based modeling for E.coli
eutopia-academy-3
All-atom MD simulations (with a focus on DNA run in AMBER)
fitness_landscape_sampling
Data from Wagner 2023 GenotypeSamplingDeep
hello-world
GitHub tutorial/
hpc-academy-2020
HPC Autumn Academy 2020 @ UoC
hpc-for-healthcare
HPC for Healthcare Workshop hosted by N8 CIR
hugo-website
A no-code, no-software and no-cost solution to publishing sophisticated web sites managed by non-technical people.
oist-rotation-bcu
Rotation project with Biological Complexity Unit @OIST in Term 1 AY 2022/23
oist-rotation-mbnu
Rotation project at Micro/Bio/Nanofluidics Unit @oist in Term 2 AY 2022/23
Orthologous_GFP_Fitness_Peaks
Repo for data and code related to the scientific article by Somermeyer et al., 'Heterogeneity of the GFP fitness landscape and data-driven protein design' published in eLife 11 (2022), DOI: 10.7554/eLife.75842.
software-carpentry
Software Carpentry workshop material and excercises
viking-1-point-scan
Directory template for the ENM 1-point mutational scan using DDPT