Igor Pisarev's repositories
bigcat
Collaborative volume annotation and segmentation with BigDataViewer
bigdataviewer-core
ImgLib2-based viewer for registered SPIM stacks and more
BigStitcher
ImgLib2/BDV implementation of Stitching for large datasets
fiji
A "batteries-included" distribution of ImageJ :battery:
imagej-ops
ImageJ Ops: "Write once, run anywhere" image processing
imglib2
A generic next-generation Java library for image processing
imglib2-algorithm
Image processing algorithms for ImgLib2
imglib2-cache
Cache interfaces and java.lang.ref based implementation.
label-utilities
Stuff like label interpolation
list-of-update-sites
The update sites ImageJ knows about automatically
mpicbg
Fiji module for image transformation and related algorithms
n5
Not HDF5
n5-blosc
Blosc compression for N5
n5-hdf5
Best effort N5 implementation on HDF5 files (despite the irony).
n5-ij
ImageJ convenience layer for N5
n5-utils
simple standalone BigDataViewer for multiple N5 (or HDF5) datasets
n5-zarr
Zarr filesystem backend for N5
ops-experiments
EXPERIMENTAL repository for exploring Ops approaches, algorithms, etc.
paintera-conversion-helper
Script to assist conversion of n5 datasets to paintera-friendly formats
pom-scijava
Friendly base POM for all SciJava-based software
pom-scijava-base
Low-level base POM for all SciJava-based software
saalfx
SaalFX: Extensions and tools for JavaFX, extracted from Paintera
spark-janelia
scripts for using spark on janelia's cluster
stitching-spark
Reconstruct big images from overlapping tiled images on a Spark cluster.