Ignacio Eguinoa's repositories
consensus_sequence_ena_galaxy
Galaxy tool wrapper to submit assembly consensus sequences to ENA using webin cli
betterpython
Code examples for my Write Better Python Code series on YouTube.
bioconda-recipes
Conda recipes for the bioconda channel.
clean_reads_wrapper
Galaxy wrapper for reads filtering tool.
CRISPResso2_wrapper
Galaxy wrapper for CRISPResso2
data_manager_fetch_gff
Galaxy Data Manager to fetch gene annotation files
data_manager_fetch_tx2gene
Load tx2gene table with transcript to gene tables or GTF/GFF file.
ena-upload-cli
ENA upload tool - script your Open Data upload to the European Nucleotide Archive
galaxy-hub
Galaxy Community Hub
galaxy-provenance-capture
Retrospective provenance capturing from Galaxy workflow invocations
galaxy_data_management
Adding genomes and genome information to Galaxy
galaxy_tools_wrappers
Staging area for Galaxy wrappers
galaxywrappers
Collection of Galaxy tool wrappers by me
golang-gx-evaluation
Load Galaxy based tool definitions and evaluate them to get an executable task, using a provided key-value map to resolve inputs.
plantref
Refgenieserver content repository for plant genomes server
refgenie
Reference genome resource manager
ro-crate-py
(for now experimental) Python library for RO-Crate
ro-crate-python
Python library for managing RO-Crate packages.
ro-crate-reference-workflow
Creating a RO-Crate package containing a reference workflow
SARS-CoV-2
Initial analysis of COVID-19 data using Galaxy, BioConda and public research infrastructures
telegraf
The plugin-driven server agent for collecting & reporting metrics.
tximport-galaxy-wrapper
Wrapper for the package tximport (https://bioconductor.org/packages/release/bioc/html/tximport.html)
website
UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)
workflow-testing-page
Testing format to report workflows results