Idowu Olawoye's repositories
VCF_heatmap
R script for VCF visualisation
2017-04-03-adv-r-progr-EMBL
Advanced R programming course at EMBL, 3-4 April 2017
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
bactopia
A flexible pipeline for complete analysis of bacterial genomes
cookiecutter-snakemake-workflow
A cookiecutter template for Snakemake workflows
deepvariant
Google's DeepVariant variant caller as a Nextflow pipeline
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
docker_builds_dev
docker build dev
idolawoye.github.io
Personal website
MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
NGS-RNAseq-training
Hands-On training 2015
Nigeria-covid-19
Geospatial data for the Nigerian novel coronavirus confirmed cases. Data are manually curated from http://covid19.ncdc.gov.ng/
Nigeria_nextstrain
Nextstrain build for Nigerian SARS-CoV-2 genomes
python-functions-and-modules
Python3 teaching materials for functions and modules (1 day)
SARS-CoV-2_Multi-PCR_v1.0
SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
sequence-upload-to-gs
Incremental upload of Illumina sequencing runs to GS from a companion computer, or directly from Linux-based Illumina sequencers
titan
Public health bioinformatics repository for WDL workflows to analyze viral genomes.