Iddo Friedberg (idoerg)

idoerg

Geek Repo

Company:Iowa State University

Location:Ames, IA, USA

Home Page:http://iddo-friedberg.net

Github PK Tool:Github PK Tool


Organizations
CAFA-Challenge

Iddo Friedberg's repositories

cafa-format-check

Format checkers for CAFA predictions files

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CAFA-sp-targets

CAFA-sp-targets

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Friedberg-Lab

Scripts originating in Iddo Friedberg's lab and may be of general Interest

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papertooter

A script to post manuscripts from biorxiv to Mastodon using a unique hashtag based on the manuscript DOI.

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Bacteriocin_paper

All the notebooks and files for the bacteriocin prediction paper

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biopython

Official git repository for Biopython (originally converted from CVS)

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CAFA-evaluator

Evaluation software of the CAFA challenge

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CAFA_assessment_tool

Precision-Recall based assessment for CAFA

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CAFA_evaluation

A tool for evaluating CAFA predictions

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dblp-pub

A scraper that downloads search results from DBLP.

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dblp-python

A simple Python wrapper around the DBLP API, currently supporting author search and author and publication lookup.

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epitope_tag

Project for internal epitope tagging.

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GOFindBias

The current main function of this project is to help people with .gaf file analysis.

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InformationAccretion

Compute Information Accretion of ontology terms from a dataset

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jekyll-now

Build a Jekyll blog in minutes, without touching the command line.

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kindred

A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).

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NeuBI

Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.

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newsletter

repo for OBF community newsletter updates

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paperchaser

A script to help with departmental or program reviews

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POEM_py3k

POEM in python3

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pygeneweld

GeneWeld scripts in Python

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TRAC

Transfer learning for Antibiotic resistance gene classification

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