Iddo Friedberg's repositories
cafa-format-check
Format checkers for CAFA predictions files
CAFA-sp-targets
CAFA-sp-targets
Friedberg-Lab
Scripts originating in Iddo Friedberg's lab and may be of general Interest
papertooter
A script to post manuscripts from biorxiv to Mastodon using a unique hashtag based on the manuscript DOI.
Bacteriocin_paper
All the notebooks and files for the bacteriocin prediction paper
CAFA-evaluator
Evaluation software of the CAFA challenge
CAFA_assessment_tool
Precision-Recall based assessment for CAFA
CAFA_evaluation
A tool for evaluating CAFA predictions
dblp-pub
A scraper that downloads search results from DBLP.
dblp-python
A simple Python wrapper around the DBLP API, currently supporting author search and author and publication lookup.
epitope_tag
Project for internal epitope tagging.
GOFindBias
The current main function of this project is to help people with .gaf file analysis.
InformationAccretion
Compute Information Accretion of ontology terms from a dataset
jekyll-now
Build a Jekyll blog in minutes, without touching the command line.
kindred
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
newsletter
repo for OBF community newsletter updates
paperchaser
A script to help with departmental or program reviews
POEM_py3k
POEM in python3
pygeneweld
GeneWeld scripts in Python