idoerg

cafa-format-check

Format checkers for CAFA predictions files

CAFA-sp-targets

CAFA-sp-targets

Friedberg-Lab

Scripts originating in Iddo Friedberg's lab and may be of general Interest

papertooter

A script to post manuscripts from biorxiv to Mastodon using a unique hashtag based on the manuscript DOI.

Ancestral-Blocks-Reconstruction

Bacteriocin_paper

All the notebooks and files for the bacteriocin prediction paper

biopython

Official git repository for Biopython (originally converted from CVS)

CAFA-evaluator

Evaluation software of the CAFA challenge

CAFA_assessment_tool

Precision-Recall based assessment for CAFA

CAFA_benchmark

CAFA_evaluation

A tool for evaluating CAFA predictions

dblp-pub

A scraper that downloads search results from DBLP.

dblp-python

A simple Python wrapper around the DBLP API, currently supporting author search and author and publication lookup.

debias

epitope_tag

Project for internal epitope tagging.

GenomicIslandPrediction

GOFindBias

The current main function of this project is to help people with .gaf file analysis.

GOThresher

idoerg.github.io

InformationAccretion

Compute Information Accretion of ontology terms from a dataset

jekyll-now

Build a Jekyll blog in minutes, without touching the command line.

kindred

A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).

NeuBI

Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.

newsletter

repo for OBF community newsletter updates

paperchaser

A script to help with departmental or program reviews

POEM

POEM_py3k

POEM in python3

pygeneweld

GeneWeld scripts in Python

Relevant-Operon

TRAC

Transfer learning for Antibiotic resistance gene classification